According to the LEED credit library, the Energy and Atmosphere category for Building Design and Construction: New Construction and Major Renovation has 6 prerequisites and 11 credits, with a total of 33 possible points. The prerequisites are:
Fundamental Commissioning and Verification (required)
Minimum Energy Performance (required)
Building-Level Energy Metering (required)
Fundamental Refrigerant Management (required)
Construction Activity Pollution Prevention (required)
Advanced Energy Metering (required)
The credits are:
Enhanced Commissioning (2-6 points)
Optimize Energy Performance (1-18 points)
Advanced Energy Metering (1 point)
Demand Response (1-2 points)
Renewable Energy Production (1-3 points)
Enhanced Refrigerant Management (1 point)
Green Power and Carbon Offsets (1-2 points)

Native species are plants that are adapted to the local climate and soil conditions, and therefore require less water and maintenance than non-native species. By maximizing the use of native species in the landscaping design, the project can reduce the need for potable water for irrigation and achieve the Outdoor Water Use Reduction credit under LEED v4 Water Efficiency category1.
LEED v4: Building Design + Construction Guide1, page 35

Increasing the amount of ventilation in an occupied space affects the Indoor Environmental Quality credit category. Ventilation is the process of supplying fresh outdoor air and removing stale indoor air from a building. Ventilation can improve the indoor environmental quality by diluting or removing indoor pollutants, such as carbon dioxide, volatile organic compounds, or particulate matter, and enhancing the thermal comfort and well-being of the occupants. The LEED Green Associate Candidate Handbook states that one of the strategies for achieving indoor environmental quality is to "increase ventilation rates" [1, p.
16]. References: LEED Green Associate Candidate Handbook, [Ventilation | U.S. Department of Energy]

The owner is one of the team members who should participate in the initial evaluation to determine which level of LEED certification to target. The owner is the person or entity who has the authority and responsibility to make decisions about the project's goals, budget, schedule, and design. The owner's involvement is crucial for setting the vision and expectations for the project's sustainability performance and selecting the appropriate LEED rating system and certification level. The LEED Green Associate Candidate Handbook states that one of the steps in the integrative process is to "engage in a preliminary LEED assessment with key project team members, including owner" [1, p. 12]. References: LEED Green Associate Candidate Handbook, [Integrative Process | U.S. Green Building Council]

Placing grilles, grates or mats at all major entrances is an example of permanent entryway systems used to reduce dust, dirt and contaminants brought into a facility. Permanent entryway systems are designed to capture dirt and particulates from people's shoes and prevent them from entering the indoor environment.
This improves the indoor air quality and reduces the need for cleaning and maintenance. The LEED Green Associate Candidate Handbook states that one of the strategies for achieving indoor environmental quality is to "use permanent entryway systems (grilles, grates, mats) to reduce particulate matter being brought into buildings at regular entryways" [1, p. 16]. References: LEED Green Associate Candidate Handbook, [Indoor Environmental Quality | U.S. Green Building Council]